BioJulia

BBMap/BBTools — suite of 265+ fast, multithreaded Java-based bioinformatics tools for DNA/RNA sequence analysis. Includes BBMap short read aligner, BBDuk adapter trimmer and quality filter, BBMerge pa

2 shared topics • 1 shared operation

CrossMap is a Python tool for genome coordinate liftover — converting genomic positions between different genome assemblies (e.g., hg19 to hg38, GRCh37 to GRCh38, mm9 to mm10). Supports BED, BAM/SAM/C

2 shared topics • 1 shared operation

LSHTM PathogenSeq bioinformatics pipelines for pathogen whole-genome sequencing analysis, including TB-Profiler for Mycobacterium tuberculosis lineage and drug-resistance prediction from WGS data, Mal

2 shared topics • 1 shared operation

SOAPdenovo2 — de novo short-read genome assembler for large plant and animal genomes using de Bruijn graph construction. Runs a four-stage pipeline: pregraph (k-mer graph), contig (initial contigs), m

2 shared topics • 1 shared operation

Wellcome Sanger Institute tools and resources — access COSMIC somatic mutation data, run Cancer Genome Project (CGP) WGS somatic variant calling pipelines (CaVEMan SNVs, Pindel indels, BRASS SVs, ASCA

2 shared topics • 1 shared operation