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Wellcome Sanger Institute tools and resources — access COSMIC somatic mutation data, run Cancer Genome Project (CGP) WGS somatic variant calling pipelines (CaVEMan SNVs, Pindel indels, BRASS SVs, ASCA
Use with AI
Install the MCP server or CLI to instantly fetch Wellcome Sanger Institute documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/sanger
LSHTM PathogenSeq bioinformatics pipelines for pathogen whole-genome sequencing analysis, including TB-Profiler for Mycobacterium tuberculosis lineage and drug-resistance prediction from WGS data, Mal
2 shared topics • 2 shared operations
PCAWG (Pan-Cancer Analysis of Whole Genomes) pipelines — standardized bioinformatics workflows from the ICGC-TCGA Pan-Cancer consortium for whole-genome somatic analysis of cancer samples. Includes al
2 shared topics • 2 shared operations
BBMap/BBTools — suite of 265+ fast, multithreaded Java-based bioinformatics tools for DNA/RNA sequence analysis. Includes BBMap short read aligner, BBDuk adapter trimmer and quality filter, BBMerge pa
2 shared topics • 1 shared operation
Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol
2 shared topics • 1 shared operation
RTG Tools — Java-based toolkit from Real Time Genomics for haplotype-aware variant call comparison, VCF filtering, statistics, and pedigree analysis. Primary use: vcfeval for benchmarking variant call
2 shared topics • 1 shared operation