BaalChIP — Bioconductor R package for detecting allele-specific binding (ASB) in ChIP-seq data. Identifies allelic imbalance at heterozygous SNPs using a Bayesian statistical framework with logistic r
Use with AI
Install the MCP server or CLI to instantly fetch BaalChIP documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/baalchip
BWA-MEM2 — accelerated Burrows-Wheeler Aligner for mapping short DNA reads to reference genomes. Use when aligning Illumina WGS, WES, targeted panel, ChIP-seq, or ATAC-seq FASTQ reads. Drop-in replace
2 shared topics • 2 shared operations
CNVpytor — Python tool for copy number variation (CNV) detection from whole-genome sequencing (WGS) BAM/CRAM files. Analyzes read depth signals with adjustable bin sizes, calls deletions and duplicati
2 shared topics • 2 shared operations
GREML (GCTA) — genome-based restricted maximum likelihood analysis for SNP heritability estimation, genetic correlation, mixed linear model association (MLMA), and COJO conditional analysis. Use when
2 shared topics • 2 shared operations
GWAS Catalog — EBI/NHGRI curated repository of genome-wide association study summary statistics, significant SNP-trait associations, and ancestry metadata. Query trait-SNP associations, download GWAS
2 shared topics • 2 shared operations
SuSiE (Sum of Single Effects) — R package for Bayesian variable selection and fine-mapping of GWAS loci. Fits a sparse regression model to identify credible sets of likely causal variants with posteri
2 shared topics • 2 shared operations