Augur

BioPython.PDB -- Python module for structural biology and macromolecular structure analysis. Parses PDB and mmCIF files, navigates the Structure-Model-Chain-Residue-Atom (SMCRA) hierarchy, computes at

1 shared topic • 2 shared operations

Mothur is an open-source bioinformatics platform for microbial ecology analysis. Provides tools for 16S/18S/ITS amplicon sequence processing, OTU clustering, phylotype classification, ASV generation,

1 shared topic • 2 shared operations

ProDy — Python library for protein dynamics analysis and structural bioinformatics. Provides elastic network models (GNM, ANM), principal component analysis (PCA) of structural ensembles and MD trajec

1 shared topic • 2 shared operations

Protégé is an open-source ontology editor and knowledge graph framework for creating, editing, and reasoning over OWL and RDF ontologies. Use for biomedical ontology development (Gene Ontology, SNOMED

1 shared topic • 2 shared operations

Pychopper — Nanopore direct cDNA read preprocessing tool that identifies, orients, and trims full-length reads using primer detection (pHMM or alignment). Rescues fused reads by dynamic programming, e

1 shared topic • 2 shared operations