Ag100Pest Pipelines

Use when working with Bandage-NG (BandageNG), the modernized genome assembly graph visualization tool. Covers loading GFA, FASTG, and Trinity assembly graphs, rendering graph images from the command l

1 shared topic • 3 shared operations

nf-core/mag — Nextflow pipeline for metagenome-assembled genome (MAG) analysis. Takes raw short-read (Illumina) and/or long-read (Nanopore/PacBio) metagenomic sequencing data through quality control,

1 shared topic • 3 shared operations

Tree of Life pipelines from the Wellcome Sanger Institute (sanger-tol) are a suite of Nextflow/nf-core pipelines for biodiversity genomics: genome assembly (genomeassembler), assembly validation (tree

1 shared topic • 3 shared operations

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

1 shared topic • 2 shared operations

gffread -- GFF/GTF utility for filtering, converting, and extracting sequences from genome annotation files. Converts between GFF3 and GTF formats, extracts transcript (FASTA) and protein sequences fr

1 shared topic • 2 shared operations