AFNI

EIGENSOFT / smartpca — suite for population structure analysis and stratification correction in genome-wide genetic studies. smartpca performs principal component analysis (PCA) on genotype data to in

1 shared topic • 1 shared operation

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

1 shared topic • 1 shared operation

NanoStat — Python tool for calculating statistics from Oxford Nanopore and PacBio long-read sequencing data. Reads FASTQ, FASTA, BAM, and sequencing summary files to produce read length distributions,

1 shared topic • 1 shared operation

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 1 shared operation

RASQUAL (Robust Allele Specific QUantification and quality controL) — joint QTL mapping tool that integrates total read counts and allele-specific reads for cis-regulatory variant discovery. Detects i

1 shared topic • 1 shared operation