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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 333 | Pavian | Metagenomics | Metagenomics | 38.74 | +10% |
| 1391 | PathVisio | Systems Biology | Systems Biology | 26.7 | +3% |
Data as of: Apr 12, 2026
| 1390 |
| pathview |
| Systems Biology |
| Systems Biology |
| 26.7 |
| +3% |
| 1705 | PathML | Imaging | Imaging | 24.3 | +3% |
| 454 | Pathfindr | Transcriptomics | Transcriptomics | 35.86 | +5% |
| 1704 | patchwork | Visualization | Visualization | 24.3 | +3% |
| 681 | ParSNP | Phylogenetics | Phylogenetics | 35.74 | +8% |
| 1918 | Parsl | Workflows | Workflows | 21.84 | +3% |
| 1917 | Parallel Future | Utilities & Infrastructure | Utilities & Infrastructure | 21.84 | +3% |
| 557 | Paragraph | Genomics | Genomics | 35.8 | +8% |