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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1397 | PEPPER-Margin-DeepVariant | Genomics | Genomics | 26.7 | +3% |
| 1396 | PEPPER | Genomics | Genomics | 26.7 | +3% |
Data as of: Apr 12, 2026
| 1186 |
| Pegasus (Cumulus/Pegasus) |
| Transcriptomics |
| Transcriptomics |
| 26.7 |
| +3% |
| 684 | Pegasus | Single-Cell | Single-Cell | 35.74 | +8% |
| 1706 | pegas | Other | Other | 24.3 | +3% |
| 1395 | PEER | Population Genetics | Population Genetics | 26.7 | +3% |
| 393 | Peddy | Genomics | Genomics | 36.4 | +8% |
| 1394 | Peakachu | Genomics | Genomics | 26.7 | +3% |
| 951 | pdf2image | Visualization | Visualization | 29.34 | +3% |
| 683 | PDBe Tools / Molstar | Utilities & Infrastructure | Utilities & Infrastructure | 35.74 | +8% |