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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 807 | phyloseq -- Microbiome Data Analysis in R | Metagenomics | Metagenomics | 29.7 | +3% |
| 2062 | PhyloMeasures | Other | Other | 10.5 | 0% |
Data as of: Apr 12, 2026
| 415 |
| PhyloBayes |
| Phylogenetics |
| Phylogenetics |
| 36.34 |
| +8% |
| 1921 | PhyDyn | Clinical Genomics | Clinical Genomics | 21.84 | +3% |
| 2055 | phy | Systems Biology | Systems Biology | 15.3 | +3% |
| 1029 | PhiSpy | Metagenomics | Metagenomics | 27.3 | +3% |
| 560 | Philosopher | Proteomics | Proteomics | 35.8 | +8% |
| 884 | Phenix | Structure Prediction | Structure Prediction | 29.4 | +3% |
| 1708 | pheatmap | Imaging | Imaging | 24.3 | +3% |
| 806 | PHATE | Statistics | Statistics | 29.7 | +3% |