pheatmap

Bio-Formats — Java library for reading and writing microscopy image formats. Supports 160+ file formats including OME-TIFF, CZI (Zeiss), LIF (Leica), ND2 (Nikon), VSI (Olympus), and proprietary vendor

1 shared topic • 1 shared operation

bioio — plugin-based Python library for reading and writing biological microscopy and imaging files. Supports OME-TIFF, CZI (Zeiss), LIF (Leica), nd2 (Nikon), TIFF, PNG, and many more formats via form

1 shared topic • 1 shared operation

Use when working with brainrender — a Python library for 3D visualization of neuroscience data including brain atlases, neuron morphologies, cell distributions, and volumetric data. Part of the BrainG

1 shared topic • 1 shared operation

Giotto Suite — comprehensive R framework for spatial multi-omics analysis supporting 20+ spatial technologies (Visium, MERFISH, Xenium, CosMx, Slide-seq, seqFISH, CODEX, Stereo-seq). Technology-agnost

1 shared topic • 1 shared operation

STARmap (Spatially-resolved Transcript Amplicon Readout mapping) — in situ spatial transcriptomics method that combines hydrogel-tissue chemistry with sequencing-by-hybridization (SEDAL) for multiplex

1 shared topic • 1 shared operation