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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 886 | ProteinMPNN | Structure Prediction | Structure Prediction | 29.4 | +3% |
| 686 | ProteinBERT | Proteomics | Proteomics | 35.74 | +8% |
Data as of: Apr 12, 2026
| 732 |
| Protégé |
| Systems Biology |
| Systems Biology |
| 35.5 |
| +8% |
| 885 | Prosit | Proteomics | Proteomics | 29.4 | +3% |
| 1718 | Pronto | Systems Biology | Systems Biology | 24.3 | +3% |
| 15 | Prokka | Genomics | Genomics | 63.4 | +15% |
| 1717 | PROGENy / footprintR | Systems Biology | Systems Biology | 24.3 | +3% |
| 1415 | PROGENy | Systems Biology | Systems Biology | 26.7 | +3% |
| 1716 | ProGen | Machine Learning | Machine Learning | 24.3 | +3% |
| 564 | ProDy | Structure Prediction | Structure Prediction | 35.8 | +8% |