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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 410 | EMAN2 | Structure Prediction | Structure Prediction | 36.34 | +8% |
| 1227 | EMBL-EBI | Utilities & Infrastructure | Utilities & Infrastructure | 26.7 | +3% |
Data as of: Apr 12, 2026
| 924 | emmeans | Statistics | Statistics | 29.34 | +3% |
| 629 | EmptyDrops (DropletUtils) | Transcriptomics | Transcriptomics | 35.74 | +8% |
| 217 | EMU | Metagenomics | Metagenomics | 38.8 | +8% |
| 746 | ENA Browser Tools | Utilities & Infrastructure | Utilities & Infrastructure | 29.88 | +3% |
| 630 | ENCODE Pipeline | Epigenomics | Epigenomics | 35.74 | +8% |
| 1228 | ENCODE Pipeline ATAC-seq | Epigenomics | Epigenomics | 26.7 | +3% |
| 1620 | ENCODE tools | Utilities & Infrastructure | Utilities & Infrastructure | 24.3 | +3% |
| 776 | EncyclopeDIA | Proteomics | Proteomics | 29.7 | +3% |