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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 576 | scArches | Single-Cell | Single-Cell | 35.8 | +8% |
| 1437 | scanpy-plots | Visualization | Visualization | 26.7 | +3% |
Data as of: Apr 12, 2026
| 81 |
| Scanpy |
| Single-Cell |
| Single-Cell |
| 44.92 |
| +8% |
| 895 | Scanorama -- Efficient Integration of Single-Cell Transcriptomes | Transcriptomics | Transcriptomics | 29.4 | +3% |
| 2012 | scales | Visualization | Visualization | 19.44 | +3% |
| 352 | SBOLDesigner | Systems Biology | Systems Biology | 37.3 | +8% |
| 1436 | SBML Tools | Systems Biology | Systems Biology | 26.7 | +3% |
| 21 | SBayesR / SBayesRC | Population Genetics | Population Genetics | 62.68 | +15% |
| 1104 | SAVANA | Genomics | Genomics | 26.76 | +3% |
| 1435 | SATURN | Machine Learning | Machine Learning | 26.7 | +3% |