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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 208 | csvtk | Utilities & Infrastructure | Utilities & Infrastructure | 38.8 | +8% |
| 209 | Cufflinks | Transcriptomics | Transcriptomics | 38.8 | +8% |
Data as of: Apr 12, 2026
| 1185 | Cuffmerge | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 500 | Cumulus | Single-Cell | Single-Cell | 35.8 | +8% |
| 1188 | CUT&RUNTools 2.0 | Single-Cell | Single-Cell | 26.7 | +3% |
| 16 | Cutadapt | QC & Preprocessing | QC & Preprocessing | 63.28 | +15% |
| 54 | cuteSV | Genomics | Genomics | 45.88 | +8% |
| 1187 | CutITS | Metagenomics | Metagenomics | 26.7 | +3% |
| 23 | Cvxpy | Statistics | Statistics | 61.84 | +17% |
| 1050 | CWL (Common Workflow Language) | Utilities & Infrastructure | Utilities & Infrastructure | 27 | +3% |