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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 2025 | ScrumPy | Systems Biology | Systems Biology | 18.84 | +3% |
| 985 | Scrublet | Single-Cell | Single-Cell | 28.86 | +3% |
Data as of: Apr 12, 2026
| 706 |
| scRepertoire -- Single-Cell Immune Repertoire Analysis |
| Genomics |
| Genomics |
| 35.74 |
| +8% |
| 466 | ScreenProcessing | Systems Biology | Systems Biology | 35.86 | +8% |
| 705 | SCRAN.pool | Single-Cell | Single-Cell | 35.74 | +8% |
| 1813 | scran -- Single-Cell RNA-Seq Normalization and Analysis | Transcriptomics | Transcriptomics | 22.8 | +3% |
| 1446 | SCpubr | Visualization | Visualization | 26.7 | +3% |
| 959 | scPrediXcan | Population Genetics | Population Genetics | 29.34 | +3% |
| 704 | Scout | Clinical Genomics | Clinical Genomics | 35.74 | +8% |
| 1445 | scMoMaT | Systems Biology | Systems Biology | 26.7 | +3% |