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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 738 | scipyoptimize | Statistics | Statistics | 30.18 | +3% |
| 739 | BEAST2 | Phylogenetics | Phylogenetics | 30 | +3% |
Data as of: Apr 12, 2026
| 741 |
| TreeTime |
| Phylogenetics |
| Phylogenetics |
| 30 |
| +3% |
| 743 | bgzip | Utilities & Infrastructure | Utilities & Infrastructure | 29.94 | +3% |
| 744 | NiBabel | Imaging | Imaging | 29.94 | +3% |
| 745 | TOBIAS | Epigenomics | Epigenomics | 29.94 | +3% |
| 746 | ENA Browser Tools | Utilities & Infrastructure | Utilities & Infrastructure | 29.88 | +3% |
| 747 | nf-core lint | Workflows | Workflows | 29.88 | +3% |
| 749 | FreeSurfer | Systems Biology | Systems Biology | 29.76 | +3% |
| 750 | GetOrganelle | Genomics | Genomics | 29.76 | +3% |