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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 585 | Squidpy | Imaging | Imaging | 35.8 | +10% |
| 1750 | sQTLseekeR | Population Genetics | Population Genetics | 24.3 | +3% |
Data as of: Apr 12, 2026
| 128 |
| Sqanti3 |
| Transcriptomics |
| Transcriptomics |
| 40.54 |
| +8% |
| 475 | SPOTlight | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 1009 | Sports/Exercise Genomics | Other | Other | 27.78 | +3% |
| 126 | Spocc | Utilities & Infrastructure | Utilities & Infrastructure | 40.6 | +8% |
| 1469 | SPM12 | Imaging | Imaging | 26.7 | +3% |
| 715 | SpliceAI | Genomics | Genomics | 35.74 | +8% |
| 1468 | Splatter | QC & Preprocessing | QC & Preprocessing | 26.7 | +3% |
| 1812 | SpikeInterface | Systems Biology | Systems Biology | 22.86 | +3% |