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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 20 | MUSCLE | Phylogenetics | Phylogenetics | 62.68 | +15% |
| 21 | SBayesR / SBayesRC | Population Genetics | Population Genetics | 62.68 | +15% |
Data as of: Apr 12, 2026
| 22 |
| StringTie |
| Transcriptomics |
| Transcriptomics |
| 62.68 |
| +15% |
| 24 | Filtlong | QC & Preprocessing | QC & Preprocessing | 60.76 | +15% |
| 26 | Rioxarray | Other | Other | 58.48 | +15% |
| 1 | VEP (Ensembl Variant Effect Predictor) | Genomics | Genomics | 68.98 | +17% |
| 8 | MultiQC | QC & Preprocessing | QC & Preprocessing | 65.2 | +17% |
| 10 | HMMER | Genomics | Genomics | 64.48 | +17% |
| 12 | BEDTools | Genomics | Genomics | 64.12 | +17% |
| 13 | HISAT2 | Genomics | Genomics | 63.88 | +17% |