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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 100 |
| ClonalFrameML |
| Phylogenetics |
| Phylogenetics |
| 42.7 |
| +8% |
| 101 | MEGAHIT | Metagenomics | Metagenomics | 42.7 | +8% |
| 98 | ACE | Systems Biology | Systems Biology | 42.82 | +8% |
| 99 | EDTA | Other | Other | 42.82 | +8% |
| 96 | Orfeo Toolbox | Other | Other | 42.88 | +10% |
| 97 | SPAdes | Metagenomics | Metagenomics | 42.88 | +8% |
| 94 | Cell Ranger | Single-Cell | Single-Cell | 42.94 | +8% |
| 95 | slow5lib / blue-crab | Genomics | Genomics | 42.94 | +8% |