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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1950 | sf | Utilities & Infrastructure | Utilities & Infrastructure | 21.84 | +3% |
| 1540 | SGD | Utilities & Infrastructure | Utilities & Infrastructure | 26.34 | +3% |
Data as of: Apr 12, 2026
| 708 | SHAPEIT4/5 | Genomics | Genomics | 35.74 | +8% |
| 1092 | Shapely | Other | Other | 26.88 | +3% |
| 281 | Shasta | Genomics | Genomics | 38.8 | +8% |
| 469 | ShortBRED | Metagenomics | Metagenomics | 35.86 | +8% |
| 1451 | ShortRead | QC & Preprocessing | QC & Preprocessing | 26.7 | +3% |
| 961 | Sickle | QC & Preprocessing | QC & Preprocessing | 29.34 | +3% |
| 470 | sigmap | Genomics | Genomics | 35.86 | +8% |
| 471 | Signac | Single-Cell | Single-Cell | 35.86 | +8% |