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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 706 | scRepertoire -- Single-Cell Immune Repertoire Analysis | Genomics | Genomics | 35.74 | +8% |
| 985 | Scrublet | Single-Cell | Single-Cell | 28.86 | +3% |
Data as of: Apr 12, 2026
| 2025 | ScrumPy | Systems Biology | Systems Biology | 18.84 | +3% |
| 1447 | SCTransform | Single-Cell | Single-Cell | 26.7 | +3% |
| 467 | scVelo | Single-Cell | Single-Cell | 35.86 | +8% |
| 1448 | scverse | Single-Cell | Single-Cell | 26.7 | +3% |
| 960 | scvi-hub | Single-Cell | Single-Cell | 29.34 | +3% |
| 1787 | scvi-tools | Single-Cell | Single-Cell | 24.18 | 0% |
| 33 | Sdm | Clinical Genomics | Clinical Genomics | 49.66 | +8% |
| 2048 | sdmpredictors | Metagenomics | Metagenomics | 15.42 | 0% |