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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1185 | Cuffmerge | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 209 | Cufflinks | Transcriptomics | Transcriptomics | 38.8 | +8% |
Data as of: Apr 12, 2026
| 208 |
| csvtk |
| Utilities & Infrastructure |
| Utilities & Infrastructure |
| 38.8 |
| +8% |
| 856 | cryoSPARC | Structure Prediction | Structure Prediction | 29.4 | +3% |
| 1184 | cryoDRGN | Structure Prediction | Structure Prediction | 26.7 | +3% |
| 1865 | Cryobiology | Other | Other | 21.84 | +3% |
| 28 | Crux | Metagenomics | Metagenomics | 50.98 | +10% |
| 768 | CrossMap | Genomics | Genomics | 29.7 | +3% |
| 499 | Cromwell / WDL | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 1063 | CRISPRscan | Systems Biology | Systems Biology | 26.94 | +3% |