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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 661 |
| MicrobiomeAnalystR |
| Metagenomics |
| Metagenomics |
| 35.74 |
| +8% |
| 660 | Mesmer | Imaging | Imaging | 35.74 | +8% |
| 659 | MEGAN Community Edition | Metagenomics | Metagenomics | 35.74 | +8% |
| 658 | MAST | Transcriptomics | Transcriptomics | 35.74 | +8% |
| 657 | malacoda | Transcriptomics | Transcriptomics | 35.74 | +8% |
| 656 | MaizeGDB | Utilities & Infrastructure | Utilities & Infrastructure | 35.74 | +8% |
| 655 | LotuS2 | Metagenomics | Metagenomics | 35.74 | +8% |
| 654 | loompy | Utilities & Infrastructure | Utilities & Infrastructure | 35.74 | +8% |