MicrobiomeAnalystR — comprehensive R package for statistical analysis of microbiome data from 16S rRNA amplicon sequencing and shotgun metagenomics. Provides alpha diversity (Shannon, Chao1, ACE, Fait
Use with AI
Install the MCP server or CLI to instantly fetch MicrobiomeAnalystR documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/microbiomeanalyst
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DMRcate — R/Bioconductor package for identifying differentially methylated regions (DMRs) from Illumina Infinium arrays (450K, EPIC, EPICv2) and whole genome bisulfite sequencing (WGBS/RRBS) data. Use
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Bracken (Bayesian Reestimation of Abundance with KrakEN) — statistical method for computing species-level abundance estimates from Kraken/Kraken2/KrakenUniq taxonomic classifications. Redistributes re
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VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
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