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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 56 | fastp | QC & Preprocessing | QC & Preprocessing | 45.88 | +8% |
| 57 | MAFFT | Phylogenetics | Phylogenetics | 45.88 | +8% |
| 58 | NanoPlot | QC & Preprocessing | QC & Preprocessing | 45.88 | +8% |
| 59 | pbmm2 | Genomics | Genomics | 45.88 | +8% |
| 60 | RSEM | Transcriptomics | Transcriptomics | 45.88 | +8% |
| 61 | Falco | QC & Preprocessing | QC & Preprocessing | 45.82 | +8% |
| 62 | Pharokka | Metagenomics | Metagenomics | 45.82 | +8% |
| 63 | Prodigal / Pyrodigal | Genomics | Genomics | 45.82 | +8% |