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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 659 | MEGAN Community Edition | Metagenomics | Metagenomics | 35.74 | +8% |
| 539 | Megalodon | Genomics | Genomics | 35.8 | +8% |
Data as of: Apr 12, 2026
| 101 |
| MEGAHIT |
| Metagenomics |
| Metagenomics |
| 42.7 |
| +8% |
| 538 | MEGA (Molecular Evolutionary Genetics Analysis) | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 369 | Meeko | Structure Prediction | Structure Prediction | 36.46 | +8% |
| 877 | mediation | Statistics | Statistics | 29.4 | +3% |
| 248 | Medaka | Genomics | Genomics | 38.8 | +8% |
| 1068 | MDTraj | Structure Prediction | Structure Prediction | 26.94 | +3% |
| 1067 | MDAnalysis | Structure Prediction | Structure Prediction | 26.94 | +3% |
| 1335 | MCScanX | Other | Other | 26.7 | +3% |