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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 14 | gffread | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 13 | gffcompare | Transcriptomics | Transcriptomics | 38.86 |
Data as of: Apr 12, 2026
| 12 | FusionCatcher | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 11 | Bio Context Lookup | Transcriptomics | Transcriptomics | 38.98 | +10% |
| 10 | Sqanti3 | Transcriptomics | Transcriptomics | 40.54 | +8% |
| 9 | T Sne | Transcriptomics | Transcriptomics | 42.16 | +10% |
| 8 | RSEM | Transcriptomics | Transcriptomics | 45.88 | +8% |
| 7 | nebula | Transcriptomics | Transcriptomics | 47.68 | +8% |
| 6 | PyDESeq2 | Transcriptomics | Transcriptomics | 50.86 | +10% |
| 5 | StringTie | Transcriptomics | Transcriptomics | 62.68 | +15% |