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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 79 | rMATS | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 49 | RNA-SeQC | Transcriptomics | Transcriptomics | 35.8 | +8% |
Data as of: Apr 12, 2026
| 88 | RNAcentral | Transcriptomics | Transcriptomics | 26.88 | +3% |
| 8 | RSEM | Transcriptomics | Transcriptomics | 45.88 | +8% |
| 50 | Sailfish | Transcriptomics | Transcriptomics | 35.8 | +8% |
| 15 | salmon | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 38 | Salmon / Alevin | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 82 | Scanorama -- Efficient Integration of Single-Cell Transcriptomes | Transcriptomics | Transcriptomics | 29.4 | +3% |
| 39 | scater | Transcriptomics | Transcriptomics | 35.86 | +8% |
| 121 | scDALI | Transcriptomics | Transcriptomics | 26.7 | +3% |