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Top bioinformatics tools ranked by usage across 104 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 49 | SpatialDE -- Spatially Variable Gene Detection | Single-Cell | Single-Cell | 35.74 | +8% |
| 27 | Cumulus | Single-Cell | Single-Cell | 35.8 |
Data as of: Apr 12, 2026
| 28 | MELD -- Quantifying Perturbation Effects at Single-Cell Resolution | Single-Cell | Single-Cell | 35.8 | +8% |
| 29 | Metacell | Single-Cell | Single-Cell | 35.8 | +8% |
| 30 | Muon | Single-Cell | Single-Cell | 35.8 | +8% |
| 31 | scArches | Single-Cell | Single-Cell | 35.8 | +8% |
| 32 | scCODA | Single-Cell | Single-Cell | 35.8 | +8% |
| 33 | Vireo | Single-Cell | Single-Cell | 35.8 | +8% |
| 16 | Decontx | Single-Cell | Single-Cell | 35.86 | +8% |
| 17 | Giotto Suite | Single-Cell | Single-Cell | 35.86 | +8% |