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Vireo (vireoSNP) is a Bayesian variational inference tool for donor demultiplexing in pooled single-cell RNA-seq and single-cell ATAC-seq experiments. It assigns cells to donors using SNP genotype inf
Use with AI
Install the MCP server or CLI to instantly fetch Vireo documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/vireo
cellSNP-lite — fast C-based tool for genotyping single cells and bulk samples at known or de-novo SNP sites from BAM/SAM files. Generates sparse genotype matrices (AD/DP/OTH counts) in VCF/BCF format
2 shared topics • 2 shared operations
FLAMES — Full-Length Analysis of Mutations and Splicing for bulk and single-cell long-read RNA-seq data. R/Bioconductor pipeline for barcode demultiplexing, isoform discovery, transcript quantificatio
2 shared topics • 2 shared operations
Data-driven computational pipeline framework enabling scalable and reproducible scientific workflows using software containers.
2 shared topics • 2 shared operations
scDALI — differential allelic imbalance and allele-specific expression (ASE) analysis in single-cell RNA-seq data using Gaussian process models. Detects whether allelic imbalance changes along cell st
2 shared topics • 2 shared operations
Benchmark and compare bioinformatics tools for a given analysis task using published benchmark data (accuracy, runtime, memory), PrecisionFDA and CAMI challenge results, bc7score community metrics, an
2 shared topics • 1 shared operation