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Top bioinformatics tools ranked by usage across 104 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 19 | Harmony -- Single-Cell Data Integration | Single-Cell | Single-Cell | 35.86 | +8% |
| 20 | LIGER | Single-Cell | Single-Cell | 35.86 | +8% |
Data as of: Apr 12, 2026
| 21 | scDblFinder | Single-Cell | Single-Cell | 35.86 | +8% |
| 22 | scVelo | Single-Cell | Single-Cell | 35.86 | +8% |
| 23 | Signac | Single-Cell | Single-Cell | 35.86 | +8% |
| 24 | SoupX | Single-Cell | Single-Cell | 35.86 | +8% |
| 25 | stLearn | Single-Cell | Single-Cell | 35.86 | +8% |
| 26 | totalVI / MultiVI | Single-Cell | Single-Cell | 35.86 | +8% |
| 27 | Cumulus | Single-Cell | Single-Cell | 35.8 | +8% |
| 28 | MELD -- Quantifying Perturbation Effects at Single-Cell Resolution | Single-Cell | Single-Cell | 35.8 | +8% |