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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 18 | Giotto Suite | Single-Cell | Single-Cell | 35.86 | +8% |
| 72 | glmGamPoi | Single-Cell | Single-Cell | 26.7 | +3% |
| 19 | Harmony -- Single-Cell Data Integration | Single-Cell | Single-Cell | 35.86 | +8% |
| 104 | inferCNV | Single-Cell | Single-Cell | 20.28 | +3% |
| 11 | kb-python | Single-Cell | Single-Cell | 38.74 | +8% |
| 52 | LIANA | Single-Cell | Single-Cell | 29.34 | +3% |
| 20 | LIGER | Single-Cell | Single-Cell | 35.86 | +8% |
| 28 | MELD -- Quantifying Perturbation Effects at Single-Cell Resolution | Single-Cell | Single-Cell | 35.8 | +8% |