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Top bioinformatics tools ranked by usage across 104 tools.
Data as of: Apr 12, 2026
| 43 | PAGA | Single-Cell | Single-Cell | 35.74 | +8% |
| 44 | Pegasus | Single-Cell | Single-Cell | 35.74 | +8% |
| 45 | pySCENIC | Single-Cell | Single-Cell | 35.74 | +8% |
| 46 | SAIGE-QTL | Single-Cell | Single-Cell | 35.74 | +8% |
| 47 | SCENIC | Single-Cell | Single-Cell | 35.74 | +8% |
| 48 | SCRAN.pool | Single-Cell | Single-Cell | 35.74 | +8% |
| 49 | SpatialDE -- Spatially Variable Gene Detection | Single-Cell | Single-Cell | 35.74 | +8% |
| 50 | Dynamo | Single-Cell | Single-Cell | 29.7 | +3% |