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Top bioinformatics tools ranked by usage across 104 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 100 | SPARK | Single-Cell | Single-Cell | 22.68 | +3% |
| 49 | SpatialDE -- Spatially Variable Gene Detection | Single-Cell | Single-Cell | 35.74 |
Data as of: Apr 12, 2026
| 81 | Spectre | Single-Cell | Single-Cell | 26.7 | +3% |
| 56 | STdeconvolve | Single-Cell | Single-Cell | 29.34 | +3% |
| 25 | stLearn | Single-Cell | Single-Cell | 35.86 | +8% |
| 82 | Tangram | Single-Cell | Single-Cell | 26.7 | +3% |
| 97 | tidyseurat | Single-Cell | Single-Cell | 24.3 | +3% |
| 83 | tidySingleCellExperiment | Single-Cell | Single-Cell | 26.7 | +3% |
| 26 | totalVI / MultiVI | Single-Cell | Single-Cell | 35.86 | +8% |
| 84 | UINMF | Single-Cell | Single-Cell | 26.7 | +3% |