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wgbs_tools — command-line toolkit for whole-genome bisulfite sequencing (WGBS) analysis. Converts, indexes, and queries methylation data in efficient PAT/BETA binary formats. Provides per-CpG and per-
Use with AI
Install the MCP server or CLI to instantly fetch wgbs_tools documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/wgbs-tools
bsseq -- Bioconductor R package for analyzing and visualizing bisulfite sequencing (BS-seq) data, including whole-genome bisulfite sequencing (WGBS) and reduced representation bisulfite sequencing (RR
3 shared topics • 1 shared operation
dmrseq is an R/Bioconductor package for detecting differentially methylated regions (DMRs) from whole-genome bisulfite sequencing (WGBS) data. It fits a generalized least squares model with a smooth c
3 shared topics • 1 shared operation
FAN-C is a Python framework for analysis, visualization, and exploration of Hi-C and related chromatin conformation capture data. Provides a unified API for importing, processing, and analyzing Hi-C c
3 shared topics • 1 shared operation
Bismark — bisulfite-seq alignment and methylation calling toolkit. Maps bisulfite-treated reads to a reference genome using Bowtie 2, HISAT2, or minimap2, performs cytosine methylation calls in CpG/CH
3 shared topics
Use when working with bsseeker2 — BSseeker2 — bisulfite sequencing aligner
3 shared topics