VariantAnnotation

Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi

2 shared topics • 2 shared operations

overlapSelect — UCSC Kent utilities command-line tool for filtering genomic records based on coordinate overlap. Selects (or excludes) records from a BED, PSL, genePred, or tab-delimited input file wh

2 shared topics • 2 shared operations

Use when working with slivar — slivar — fast VCF/BCF variant filtering

2 shared topics • 2 shared operations

SnpSift -- Java-based toolset for filtering, annotating, and manipulating annotated VCF files from SnpEff or other variant callers. Provides expression-based filtering (filter), database annotation wi

2 shared topics • 2 shared operations

Strelka2 — fast and accurate small variant caller for germline and somatic analysis. Detects SNVs and indels (up to ~49 bp) from mapped paired-end sequencing reads with tiered haplotype modeling, adap

2 shared topics • 2 shared operations