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Ubergraph — integrated biomedical ontology knowledge graph built from ~100 OBO ontologies (GO, UBERON, CL, HP, MP, CHEBI, RO, and more) with pre-materialized OWL reasoning. Query the public SPARQL end
Use with AI
Install the MCP server or CLI to instantly fetch Ubergraph documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ubergraph
docker pull biocontainers/ubergraph:1.0dnaplotlib — Python library for programmable visualization of genetic designs and synthetic biology circuits. Renders genetic parts (Promoter, RBS, CDS, Terminator, Spacer) as vector-quality matplotli
2 shared topics • 1 shared operation
FUMA (Functional Mapping and Annotation of Genome-Wide Association Studies) maps GWAS summary statistics to genes and biological functions via three complementary strategies: positional mapping, eQTL
2 shared topics • 1 shared operation
Use when working with OWLTools — a Java command-line toolkit for manipulating OWL and OBO biomedical ontologies. Supports graph traversal, subset extraction, reasoner-based inference (Elk, HermiT), SP
2 shared topics • 1 shared operation
STRING-db — protein-protein interaction (PPI) network database and API covering known and predicted interactions for over 67 million proteins across 14,000 organisms. Query functional protein associat
2 shared topics • 1 shared operation
VIBRANT — metagenomics tool for identifying and annotating viruses from microbial assemblies (metagenomes, isolates, and virome datasets). Uses neural networks and KEGG/Pfam/VOG HMM profiles to classi
2 shared topics • 1 shared operation