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tRNAscan-SE — genome-wide tRNA gene prediction tool that uses covariance models via Infernal to identify, score, and classify transfer RNA genes in eukaryotic, bacterial, archaeal, and mitochondrial s
Use with AI
Install the MCP server or CLI to instantly fetch tRNAscan-SE documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/trnascan-se
LTR_retriever — command-line Perl tool for high-accuracy identification of Long Terminal Repeat retrotransposons (LTR-RTs) in plant and eukaryotic genomes. Filters raw LTRharvest and LTR_FINDER candid
1 shared topic • 3 shared operations
ncbi-genome-download is a Python CLI tool and library for bulk downloading genome sequences and associated files from NCBI RefSeq and GenBank FTP servers. Supports all taxonomic groups (bacteria, fung
1 shared topic • 3 shared operations
Pharokka — fast, scalable bacteriophage genome annotation. Annotates phage genomes using pyhmmer (PHROGs), MMseqs2 (CARD, VFDB, COG), and tRNAscan-SE. Produces GenBank, GFF3, and tabular outputs in mi
1 shared topic • 3 shared operations
Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi
1 shared topic • 2 shared operations
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
1 shared topic • 2 shared operations