Trim Galore

DKFZ OTP (One Touch Pipeline) — the German Cancer Research Center ODCF bioinformatics platform for large-scale genomic sequencing data management and analysis. Provides Roddy-based workflows for align

3 shared topics • 2 shared operations

Use when working with DropletUtils for processing droplet-based single-cell RNA-seq data from 10x Genomics CellRanger output. DropletUtils provides read10xCounts() for loading MEX/HDF5 output, emptyDr

2 shared topics • 2 shared operations

Use when working with nf-core/rnafusion — a Nextflow pipeline for RNA fusion gene detection and quantification. Detects fusion transcripts from RNA-seq data using up to six callers (STAR-Fusion, Arrib

2 shared topics • 2 shared operations

nf-core/methylseq — community-curated Nextflow pipeline for whole-genome bisulfite sequencing (WGBS) and reduced representation bisulfite sequencing (RRBS) data analysis. Handles adapter trimming (Tri

2 shared topics • 2 shared operations

nf-core/scrnaseq — Nextflow pipeline for single-cell RNA-seq quantification and preprocessing. Supports multiple alignment/quantification methods including Cell Ranger, STARsolo, Alevin-fry (Salmon),

2 shared topics • 2 shared operations