Trackpy

AICSImageIO — Python library for reading and writing multi-dimensional microscopy image data. Supports CZI (Zeiss), LIF (Leica), ND2 (Nikon), OME-TIFF, TIFF, and DV formats via a unified AICSImage int

1 shared topic • 2 shared operations

Bio-Formats — Java library for reading and writing microscopy image formats. Supports 160+ file formats including OME-TIFF, CZI (Zeiss), LIF (Leica), ND2 (Nikon), VSI (Olympus), and proprietary vendor

1 shared topic • 2 shared operations

bioio — plugin-based Python library for reading and writing biological microscopy and imaging files. Supports OME-TIFF, CZI (Zeiss), LIF (Leica), nd2 (Nikon), TIFF, PNG, and many more formats via form

1 shared topic • 2 shared operations

btrack is a Bayesian multi-object cell tracking library for time-lapse microscopy data. Tracks individual cells across frames using a Bayesian belief matrix and motion model. Integrates natively with

1 shared topic • 2 shared operations

Use when working with Dipy — the Python library for diffusion MRI analysis. Covers diffusion tensor imaging (DTI), constrained spherical deconvolution (CSD), diffusion kurtosis imaging (DKI), IVIM, fi

1 shared topic • 2 shared operations