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Use when working with TaxonKit — a cross-platform NCBI taxonomy toolkit for querying lineages, converting names to TaxIds, reformatting taxonomy strings, filtering by rank, computing lowest common anc
Use with AI
Install the MCP server or CLI to instantly fetch TaxonKit documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/taxonkit
Use when working with abricate — ABRicate — mass screening of contigs
2 shared topics • 1 shared operation
antiSMASH (antibiotic & Secondary Metabolite Analysis SHell) — genome mining tool for identifying and annotating biosynthetic gene clusters (BGCs) in bacterial and fungal genomes. Detects NRPS, PKS, t
2 shared topics • 1 shared operation
BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver
2 shared topics • 1 shared operation
CheckV — assess quality and completeness of metagenome-assembled viral genomes (vMAGs) and contigs. Estimates genome completeness for circular and linear viral sequences using DTR/ITR detection, avera
2 shared topics • 1 shared operation
VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
2 shared topics • 1 shared operation