TargetScan

Use when working with AUCell — an R/Python tool for scoring gene set activity in single cells using the Area Under the Curve (AUC) metric. Computes per-cell activity scores for gene sets (regulons, pa

1 shared topic • 1 shared operation

BAGEL2 — Bayesian Analysis of Gene Essentiality v2 for identifying essential genes from CRISPR/Cas9 knockout screens. Calculates Bayes Factors from fold-change distributions using reference sets of co

1 shared topic • 1 shared operation

Prosit — deep learning framework for predicting MS2 fragment ion spectra and indexed retention times (iRT) from peptide sequences. Enables in silico spectral library generation for any organism and pr

1 shared topic • 1 shared operation

PyTorch Geometric (PyG) — graph neural network library built on PyTorch for learning on graphs and irregular structures. Provides message-passing layers (GCN, GAT, GraphSAGE, GIN, Transformer), mini-b

1 shared topic • 1 shared operation

Telomere biology toolkit for measuring telomere length from sequencing data, analyzing telomere repeat content, detecting ALT (Alternative Lengthening of Telomeres) pathways, and studying telomere str

1 shared topic • 1 shared operation