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Use when working with STAARpipeline for biobank-scale whole-genome or whole-exome rare-variant association analysis in R. Covers aGDS preparation, null model fitting, single-variant tests, gene-centri
Use with AI
Install the MCP server or CLI to instantly fetch Staarpipeline documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/staarpipeline
REGENIE — whole-genome regression for biobank-scale GWAS. Two-step ridge regression with leave-one-chromosome-out (LOCO) predictions for efficient single-variant and gene-based association testing. Su
1 shared topic • 1 shared operation
Use when working with aurora — a machine learning GWAS R package for identifying microbial habitat adaptation genes and autochthonous strain provenance. Implements a Random Forest + random-walk (AUtoc
1 shared topic
BLUPF90 suite of programs for mixed model computations, genomic selection, and variance component estimation in animal breeding. Use when working with BLUP/ssGBLUP, genomic EBVs, single-step genomic e
1 shared topic
DeepVariant — CNN-based variant caller that converts aligned reads into pileup image tensors and classifies them with a deep neural network to produce SNP and indel calls in VCF/gVCF format. Supports
1 shared topic
INSaFLU-TELEVIR is a web-based (and locally installable) bioinformatics suite for viral genomic surveillance and metagenomics-based virus detection. It processes Illumina, Ion Torrent, and Oxford Nano
1 shared topic