Somalier

DKFZ OTP (One Touch Pipeline) — the German Cancer Research Center ODCF bioinformatics platform for large-scale genomic sequencing data management and analysis. Provides Roddy-based workflows for align

2 shared topics • 1 shared operation

Use when working with DropletUtils for processing droplet-based single-cell RNA-seq data from 10x Genomics CellRanger output. DropletUtils provides read10xCounts() for loading MEX/HDF5 output, emptyDr

2 shared topics • 1 shared operation

Use when working with nf-core/rnafusion — a Nextflow pipeline for RNA fusion gene detection and quantification. Detects fusion transcripts from RNA-seq data using up to six callers (STAR-Fusion, Arrib

2 shared topics • 1 shared operation

Qualimap — platform-independent quality control tool for next-generation sequencing alignment data. Provides BAM QC (coverage, insert size, GC content, mapping quality), RNA-seq QC (gene body coverage

2 shared topics • 1 shared operation

WiggleTools — command-line toolkit for streaming arithmetic and set operations on genomic signal tracks stored in Wiggle, BigWig, BedGraph, and BAM/CRAM formats. Computes sums, means, products, log tr

2 shared topics • 1 shared operation