SMR

DMRcate — R/Bioconductor package for identifying differentially methylated regions (DMRs) from Illumina Infinium arrays (450K, EPIC, EPICv2) and whole genome bisulfite sequencing (WGBS/RRBS) data. Use

2 shared topics

LIMIX — Python library for linear mixed models (LMM) and interaction QTL (iQTL) mapping. Use for eQTL discovery, cis-QTL and trans-QTL scans, GxE interaction testing, conditional QTL analysis, and GWA

2 shared topics

methylKit -- R/Bioconductor package for DNA methylation analysis from bisulfite sequencing data. Reads Bismark, BSmap, and generic CpG coverage files. Provides differential methylation analysis at bas

2 shared topics

CmdStan — command-line interface to the Stan probabilistic programming language for Bayesian statistical modeling and high-performance inference. Compiles Stan programs (.stan) to C++ executables via

1 shared topic • 1 shared operation

PyStan — Python interface to Stan for Bayesian statistical modeling and high-performance inference. Compile Stan programs (stan.build), draw posterior samples via HMC-NUTS (model.sample), extract draw

1 shared topic • 1 shared operation