Loading homepage
smartpca/EIGENSOFT -- C/C++ tool for principal component analysis of genome-wide SNP genotype data. Computes eigenvectors and eigenvalues for population structure analysis, ancestry inference, stratif
Use with AI
Install the MCP server or CLI to instantly fetch smartpca/EIGENSOFT documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/smartpcaeigensoft
Use when working with bigsnpr — an R package for analysis of massive
2 shared topics • 2 shared operations
EIGENSOFT smartpca -- C/C++ tool for principal component analysis of genome-wide SNP genotype data. Computes eigenvectors and eigenvalues for population structure analysis, ancestry inference, stratif
2 shared topics • 2 shared operations
Use when working with MungeSumstats — a Bioconductor R package for standardizing and quality-controlling GWAS (genome-wide association study) summary statistics. Covers the full MungeSumstats pipeline
2 shared topics • 2 shared operations
snpStats is an R/Bioconductor package for GWAS (genome-wide association study) and population genetics analysis. It provides SnpMatrix and XSnpMatrix objects for efficient SNP data storage, PLINK bina
2 shared topics • 2 shared operations
VCFtools — C++ toolkit for filtering, comparing, summarizing, converting, and manipulating VCF (Variant Call Format) and BCF files. Provides site and individual-level filtering, allele frequency calcu
2 shared topics • 2 shared operations