SIP

HiC-Pro is an all-in-one pipeline for processing Hi-C sequencing data from raw FASTQ files to normalized contact matrices. Performs read alignment with Bowtie2, restriction-fragment assignment, valid-

1 shared topic • 2 shared operations

Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi

1 shared topic • 1 shared operation

BBDuk (Decontamination Using Kmers) — high-performance Java tool from the BBTools suite for adapter trimming, quality trimming, contaminant filtering, sequence masking, GC filtering, and format conver

1 shared topic • 1 shared operation

MACS2/MACS3 — Model-based Analysis of ChIP-Seq for identifying transcription factor binding sites and histone modification enrichment from ChIP-seq, ATAC-seq, and CUT&Tag data. Provides peak calling (

1 shared topic • 1 shared operation

OpenAQ — open-source platform providing free, real-time and historical air quality data from government and research-grade monitoring stations worldwide. Query PM2.5, PM10, O3, NO2, CO, SO2 measuremen

1 shared topic • 1 shared operation