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sequoia — R package for pedigree reconstruction and parentage assignment in animal, veterinary, and zoological genomics. Reconstructs multi-generational pedigrees from SNP genotype data combined with
Use with AI
Install the MCP server or CLI to instantly fetch sequoia documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/sequoia
Alleloscope — allele-specific copy number analysis and tumor clonality inference from single-cell multi-omics data (scDNA-seq and scATAC-seq). Estimates allele-specific copy number profiles using SNP
1 shared topic • 2 shared operations
Mash — fast genome and metagenome distance estimation using MinHash sketching. Estimates pairwise distances between genomic sequences (FASTA/FASTQ) without full alignment using k-mer sketches. Support
1 shared topic • 2 shared operations
ParSNP — rapid core-genome alignment and SNP detection for closely related microbial genomes (bacteria, archaea). Part of the HARVEST suite alongside HarvestTools and Gingr. Aligns hundreds of whole-g
1 shared topic • 2 shared operations
Use when working with ReactomeFIViz — a Cytoscape 3 app for Reactome Functional Interaction (FI) network analysis. Visualizes and analyzes the Reactome FI network (~300k functional interactions among
1 shared topic • 2 shared operations
Toil is a Python workflow execution engine for reproducible, scalable biomedical data analysis. Supports CWL, WDL, and Python-native workflows on local machines, HPC clusters (SLURM, LSF, Grid Engine,
1 shared topic • 2 shared operations