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Use when working with ribosome profiling (Ribo-seq) data to perform P-site offset estimation, quality control, and occupancy analysis using RiboWaltz — an R/Bioconductor package for comprehensive ribo
Use with AI
Install the MCP server or CLI to instantly fetch RiboWaltz documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ribolog
Use when integrating R and Python with reticulate: importing Python modules from R, declaring Python dependencies with py_require(), selecting Python environments (use_python/use_virtualenv/use_condae
1 shared topic • 3 shared operations
BioPython.PDB -- Python module for structural biology and macromolecular structure analysis. Parses PDB and mmCIF files, navigates the Structure-Model-Chain-Residue-Atom (SMCRA) hierarchy, computes at
1 shared topic • 2 shared operations
gt (Grammar of Tables) — R package for creating beautifully formatted, publication-ready display tables from data frames and tibbles. Provides a layered API for headers, spanners, column labels, numer
1 shared topic • 2 shared operations
Napari — fast, interactive, multi-dimensional image viewer for Python built on Qt and vispy (OpenGL). Provides GPU-accelerated rendering of 2D, 3D, and nD image data with seven layer types (Image, Lab
1 shared topic • 2 shared operations
Protégé is an open-source ontology editor and knowledge graph framework for creating, editing, and reasoning over OWL and RDF ontologies. Use for biomedical ontology development (Gene Ontology, SNOMED
1 shared topic • 2 shared operations