PyVista

Bio-Formats — Java library for reading and writing microscopy image formats. Supports 160+ file formats including OME-TIFF, CZI (Zeiss), LIF (Leica), ND2 (Nikon), VSI (Olympus), and proprietary vendor

1 shared topic • 1 shared operation

bioio — plugin-based Python library for reading and writing biological microscopy and imaging files. Supports OME-TIFF, CZI (Zeiss), LIF (Leica), nd2 (Nikon), TIFF, PNG, and many more formats via form

1 shared topic • 1 shared operation

Use when working with brainrender — a Python library for 3D visualization of neuroscience data including brain atlases, neuron morphologies, cell distributions, and volumetric data. Part of the BrainG

1 shared topic • 1 shared operation

btrack is a Bayesian multi-object cell tracking library for time-lapse microscopy data. Tracks individual cells across frames using a Bayesian belief matrix and motion model. Integrates natively with

1 shared topic • 1 shared operation

cryoSPARC — cryo-EM single particle analysis platform for high-resolution 3D structure determination. Provides motion correction, CTF estimation, particle picking (blob, template, Topaz), 2D classific

1 shared topic • 1 shared operation